JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD300E_chr17_74604885_74628738	0/0	t0014	2890	3	3	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0015	2882	3	2	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0016	2890	3	3	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0017	2884	3	0	3	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0018	2886	3	3	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0019	2888	3	0	0	1	1	1	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0020	2882	2	2	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0021	2882	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0022	2883	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0023	2864	2	2	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0024	2886	2	1	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0025	2886	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0026	2887	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0027	2894	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0028	2888	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0029	2900	2	2	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0030	2904	2	2	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0031	2882	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0032	2860	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0033	2876	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0034	2924	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0035	2884	1	0	0	0	0	1	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0036	2886	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0037	2882	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0038	2879	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0039	2886	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0040	2886	1	0	0	0	0	1	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0041	2887	1	0	0	0	0	1	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0042	2888	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0043	2890	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0044	2892	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0045	2888	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0046	2889	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0047	2886	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0048	2886	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0049	2888	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0050	2888	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0051	2888	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0052	2889	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0053	2886	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0054	2860	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0055	2920	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0056	2922	1	0	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0057	2940	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	t0058	2922	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300LB_chr17_74516174_74536475	1/1	t0001	1690	228	38	39	118	9	22	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0002	1690	104	7	24	50	8	15	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0003	1690	22	15	4	2	1	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0004	1689	11	11	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0005	1690	8	0	2	0	0	6	copy fasta	CD300LB	chr17	74516174	74536475