JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD300LB_chr17_74516174_74536475	0/0	t0006	1690	7	0	0	7	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0007	1689	7	6	1	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0008	1690	4	4	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0009	1690	3	0	1	0	0	2	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0010	1690	2	2	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0011	1690	2	2	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0012	1690	2	0	0	2	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0013	1690	1	0	1	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0014	1690	1	0	0	1	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0015	1690	1	0	1	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0016	1689	1	0	1	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0017	1690	1	1	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	t0018	1690	1	0	0	0	0	1	copy fasta	CD300LB	chr17	74516174	74536475
CD300LD_chr17_74574365_74597283	1/1	t0001	719	343	51	66	174	16	34	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0002	719	71	31	10	20	2	8	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0003	719	17	4	0	10	0	3	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0004	719	3	3	0	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0005	719	2	0	0	1	0	1	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0006	719	1	0	0	1	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0007	719	1	0	1	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0008	719	1	0	1	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	t0009	719	1	1	0	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LF_chr17_74689317_74717923	1/0	t0001	837	179	64	34	61	4	15	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/1	t0002	837	173	8	29	102	10	23	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0003	837	36	13	10	11	1	1	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0004	837	7	0	0	7	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0005	837	4	0	0	4	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0006	837	4	0	1	0	1	2	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0007	837	4	0	0	4	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0008	837	4	3	1	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0009	837	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0010	837	2	0	1	0	0	1	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0011	837	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0012	837	2	0	2	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0013	837	2	2	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0014	837	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0015	837	1	1	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0016	837	1	1	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0017	837	1	0	0	1	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0018	837	1	1	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	t0019	837	1	1	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LG_chr17_43842176_43868639	0/1	t0001	1770	216	43	55	76	9	32	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0002	1770	23	21	2	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	1/0	t0003	1770	19	17	1	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0004	1770	17	0	9	0	4	4	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0005	1770	3	3	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0006	1770	3	3	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0007	1769	3	0	0	3	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0008	1770	3	2	1	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0009	1770	2	0	0	2	0	0	copy fasta	CD300LG	chr17	43842176	43868639