JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD300LG_chr17_43842176_43868639	0/0	t0010	1770	2	2	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0011	1770	2	0	2	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0012	1770	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0013	1770	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0014	1770	1	0	1	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0015	1770	1	0	0	1	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0016	1770	1	0	1	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0017	1770	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	t0018	1770	1	0	0	0	1	0	copy fasta	CD300LG	chr17	43842176	43868639
CD302_chr2_159763628_159803208	0/0	t0001	3232	114	3	35	69	3	4	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0002	3235	89	6	12	50	4	17	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0003	3238	50	3	7	37	1	2	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	1/0	t0004	3234	42	2	2	33	2	2	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0005	3234	20	17	1	0	0	2	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0006	3235	17	17	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0007	3236	9	3	1	0	3	2	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0008	3235	7	7	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0009	3234	7	0	3	4	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0010	3237	7	6	1	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0011	3237	6	4	2	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0012	3236	4	4	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/1	t0013	3234	4	0	2	0	0	1	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0014	3237	3	0	0	1	1	1	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0015	3238	3	0	1	0	0	2	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0016	3240	3	1	0	2	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0017	3232	3	0	0	3	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0018	3263	2	2	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0019	3258	2	2	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0020	3235	2	2	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0021	3234	2	0	0	2	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0022	3237	2	2	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0023	3232	2	0	0	2	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0024	3238	2	2	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0025	3265	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0026	3236	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0027	3235	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0028	3235	1	0	0	0	0	1	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0029	3235	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0030	3234	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0031	3238	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0032	3234	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0033	3238	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0034	3234	1	0	1	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0035	3242	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	t0036	3234	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD320_chr19_8297127_8313358	0/1	t0001	405	287	46	59	136	16	29	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0002	405	43	26	7	9	0	1	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	1/0	t0003	405	25	4	8	11	0	1	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0004	406	10	3	0	0	0	7	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0005	405	7	0	0	7	0	0	copy fasta	CD320	chr19	8297127	8313358