JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD320_chr19_8297127_8313358	0/0	t0006	405	7	7	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0007	405	3	3	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0008	405	2	0	0	2	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0009	405	2	2	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0010	405	2	0	0	2	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0011	405	1	0	0	1	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	t0012	405	1	1	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD33_chr19_51220080_51245016	1/1	t0001	368	268	71	49	90	16	40	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	t0002	368	94	23	21	48	0	2	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	t0003	368	3	0	0	3	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	t0004	368	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016
CD34_chr1_207875972_207916125	1/0	t0001	6812	81	15	26	19	6	14	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0002	6817	64	2	3	56	1	2	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0003	6816	63	11	1	44	0	7	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0004	6815	41	0	10	27	1	3	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/1	t0005	6812	21	1	9	1	5	4	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0006	6816	15	0	5	8	0	2	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0007	6817	8	8	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0008	6818	8	3	2	3	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0009	6816	8	0	0	8	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0010	6812	7	6	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0011	6816	6	0	0	6	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0012	6813	5	5	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0013	6812	5	5	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0014	6813	4	2	2	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0015	6817	4	0	0	4	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0016	6818	4	2	2	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0017	6812	4	4	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0018	6812	4	4	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0019	6812	4	0	1	3	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0020	6816	3	0	1	0	2	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0021	6812	3	3	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0022	6813	3	2	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0023	6816	2	2	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0024	6818	2	1	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0025	6818	2	1	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0026	6812	2	2	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0027	6815	2	1	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0028	6817	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0029	6816	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0030	6813	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0031	6813	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0032	6812	1	0	0	0	1	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0033	6812	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0034	6813	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0035	6812	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0036	6812	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0037	6818	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0038	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0039	6816	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125