JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD34_chr1_207875972_207916125	0/0	t0040	6816	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0041	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0042	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0043	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0044	6818	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0045	6817	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0046	6818	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0047	6815	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0048	6815	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0049	6815	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0050	6815	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0051	6815	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0052	6817	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0053	6812	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0054	6812	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0055	6812	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0056	6812	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0057	6812	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0058	6812	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0059	6812	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0060	6812	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0061	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0062	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0063	6816	1	0	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0064	6816	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0065	6817	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0066	6816	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0067	6816	1	0	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0068	6817	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0069	6816	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0070	6815	1	0	0	1	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0071	6813	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	t0072	6816	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD36_chr7_80633642_80684274	0/0	t0001	3171	85	4	21	44	5	11	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0002	3180	40	12	7	13	3	5	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0003	3178	35	6	7	19	0	3	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0004	3173	30	0	0	29	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/1	t0005	3178	26	1	8	13	1	2	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0006	3173	24	2	0	20	0	2	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	1/0	t0007	3180	22	13	2	3	0	3	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0008	3171	20	3	3	7	2	5	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0009	3176	11	4	7	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0010	3178	8	0	0	8	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0011	3176	6	6	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0012	3177	5	5	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0013	3178	4	0	0	4	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0014	3182	4	3	0	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0015	3172	4	3	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0016	3176	4	4	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0017	3171	3	0	0	3	0	0	copy fasta	CD36	chr7	80633642	80684274