JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD36_chr7_80633642_80684274	0/0	t0018	3172	3	0	3	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0019	3177	3	3	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0020	3178	3	3	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0021	3182	3	3	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0022	3172	2	0	0	1	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0023	3171	2	0	2	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0024	3178	2	1	0	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0025	3177	2	2	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0026	3176	2	2	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0027	3173	2	1	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0028	3178	2	0	0	0	2	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0029	3173	2	0	0	2	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0030	3177	2	2	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0031	3171	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0032	3173	1	0	0	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0033	3178	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0034	3173	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0035	3172	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0036	3171	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0037	3171	1	0	0	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0038	3172	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0039	3171	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0040	3171	1	0	0	0	1	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0041	3178	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0042	3180	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0043	3178	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0044	3179	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0045	3181	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0046	3178	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0047	3177	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0048	3174	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0049	3177	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0050	3178	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0051	3180	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0052	3183	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0053	3173	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0054	3172	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0055	3176	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0056	3172	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0057	3177	1	0	0	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0058	3178	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0059	3181	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0060	3176	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	t0061	3171	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD37_chr19_49330406_49345606	1/1	t0001	414	373	83	68	172	8	40	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	t0002	410	7	7	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	t0003	414	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	t0004	414	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD38_chr4_15773328_15858232	0/0	t0001	4718	67	1	20	36	4	6	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/1	t0002	4717	61	5	16	22	5	12	copy fasta	CD38	chr4	15773328	15858232