JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD38_chr4_15773328_15858232	0/0	t0003	4720	29	1	13	11	2	2	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0004	4717	22	4	1	11	1	5	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0005	4720	16	0	2	13	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0006	4718	16	0	0	15	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0007	4720	10	2	3	4	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0008	4717	9	0	0	9	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0009	4720	7	2	1	3	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0010	4721	6	0	1	3	0	2	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0011	4717	6	6	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0012	4720	4	0	0	4	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0013	4719	4	0	0	3	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0014	4721	4	1	0	1	0	2	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0015	4719	3	2	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0016	4721	3	2	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0017	4717	3	3	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0018	4717	3	0	3	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0019	4717	3	3	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0020	4717	2	2	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0021	4720	2	0	0	1	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0022	4718	2	1	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0023	4717	2	2	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0024	4719	2	2	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0025	4717	2	0	0	2	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0026	4717	2	1	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0027	4717	2	0	0	2	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0028	4718	2	1	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0029	4717	2	2	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0030	4718	2	2	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0031	4717	2	0	0	2	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0032	4719	2	1	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0033	4717	2	2	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0034	4718	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0035	4719	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0036	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0037	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0038	4717	1	0	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0039	4721	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0040	4718	1	0	0	0	0	1	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0041	4720	1	0	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0042	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0043	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0044	4720	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0045	4719	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0046	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0047	4718	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0048	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0049	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0050	4718	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0051	4718	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	1/0	t0052	4718	1	0	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232