JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD38_chr4_15773328_15858232	0/0	t0053	4718	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0054	4718	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0055	4720	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0056	4720	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0057	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0058	4721	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0059	4718	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0060	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0061	4719	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0062	4709	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0063	4719	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0064	4719	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0065	4718	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0066	4719	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0067	4719	1	0	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0068	4721	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0069	4720	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0070	4717	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0071	4718	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0072	4709	1	1	0	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	t0073	4717	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD3D_chr11_118334075_118347705	1/1	t0001	186	430	86	78	198	16	50	copy fasta	CD3D	chr11	118334075	118347705
CD3D_chr11_118334075_118347705	0/0	t0002	186	2	2	0	0	0	0	copy fasta	CD3D	chr11	118334075	118347705
CD3E_chr11_118299730_118321173	1/1	t0001	738	381	82	72	170	14	41	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0002	738	16	0	1	15	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0003	738	13	12	1	0	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0004	738	2	2	0	0	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0005	738	1	0	0	1	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0006	738	1	0	0	0	0	1	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0007	738	1	0	0	1	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	t0008	738	1	0	0	1	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3G_chr11_118339344_118360161	0/0	t0001	2142	166	37	41	67	8	13	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0002	2136	98	5	5	66	1	21	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/1	t0003	2136	25	2	4	14	3	1	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0004	2143	24	8	4	10	0	2	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0005	2143	20	1	12	0	4	3	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0006	2141	19	9	4	3	0	3	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0007	2135	15	0	1	12	0	2	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0008	2137	13	0	1	10	0	2	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0009	2136	7	7	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0010	2138	5	4	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0011	2143	5	2	0	3	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	1/0	t0012	2142	4	3	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0013	2136	3	1	2	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0014	2137	3	1	0	2	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0015	2139	3	2	1	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0016	2136	2	0	2	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0017	2137	2	1	1	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0018	2137	2	2	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	t0019	2137	2	2	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161