JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD44_chr11_35134171_35237402	0/0	t0032	3203	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0033	3203	1	0	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0034	3203	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0035	3203	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0036	3203	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0037	3203	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0038	3203	1	1	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	t0039	3204	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD46_chr1_207747054_207800504	1/1	t0001	2187	246	47	39	121	11	26	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0002	2187	95	28	34	21	5	7	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0003	2187	15	8	2	5	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0004	2187	8	0	0	5	0	3	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0005	2187	5	5	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0006	2187	4	0	2	0	0	2	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0007	2187	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0008	2187	1	1	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0009	2187	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0010	2187	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0011	2187	1	1	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0012	2176	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	t0013	2187	1	0	1	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD47_chr3_108038091_108096031	0/0	t0001	4295	102	21	10	55	3	13	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0002	4304	57	0	5	43	1	8	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0003	4297	52	4	11	25	3	9	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0004	4296	30	8	14	2	4	2	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0005	4306	18	1	4	5	3	5	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0006	4293	15	10	3	0	1	1	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0007	4305	15	0	0	13	0	2	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0008	4303	11	4	2	4	0	1	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0009	4296	11	1	10	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0010	4294	6	5	1	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0011	4309	6	6	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/1	t0012	4298	5	2	2	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0013	4307	5	4	1	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0014	4308	5	5	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0015	4294	3	2	1	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0016	4304	3	2	1	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0017	4305	3	3	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0018	4295	3	3	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0019	4304	2	0	0	2	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0020	4303	2	0	0	2	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0021	4303	2	2	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0022	4306	2	2	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0023	4295	2	0	0	2	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	1/0	t0024	4321	2	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0025	4296	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0026	4304	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0027	4302	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0028	4304	1	0	1	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0029	4304	1	0	0	0	1	0	copy fasta	CD47	chr3	108038091	108096031