JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD47_chr3_108038091_108096031	0/0	t0030	4296	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0031	4296	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0032	4297	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0033	4300	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0034	4305	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0035	4306	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0036	4307	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0037	4312	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0038	4305	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0039	4305	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0040	4307	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0041	4308	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0042	4310	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0043	4295	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0044	4377	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0045	4295	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0046	4298	1	0	0	0	0	1	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0047	4323	1	1	0	0	0	0	copy fasta	CD47	chr3	108038091	108096031
CD47_chr3_108038091_108096031	0/0	t0048	4297	1	0	0	1	0	0	copy fasta	CD47	chr3	108038091	108096031
CD48_chr1_160673746_160716822	0/1	t0001	366	305	77	61	118	13	35	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	1/0	t0002	366	120	19	17	72	3	8	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	t0003	363	12	0	4	8	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	t0004	366	2	0	0	2	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	t0005	363	2	0	0	0	0	2	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	t0006	366	1	0	0	0	0	1	copy fasta	CD48	chr1	160673746	160716822
CD4_chr12_6784528_6825799	0/0	t0001	1673	140	28	17	84	1	10	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/1	t0002	1673	122	11	26	70	6	8	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0003	1673	79	19	21	15	9	15	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0004	1673	68	26	4	30	0	8	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0005	1675	7	7	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0006	1673	7	0	0	4	0	3	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0007	1673	4	2	2	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0008	1673	2	0	2	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0009	1673	2	2	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0010	1673	1	0	0	1	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0011	1673	1	0	0	1	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0012	1681	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0013	1673	1	0	0	1	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0014	1673	1	0	0	1	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0015	1673	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0016	1673	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0017	1673	1	0	0	1	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0018	1673	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	t0019	1673	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	1/0	t0020	1673	1	0	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD52_chr1_26312958_26325523	1/1	t0001	282	399	87	76	178	18	38	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	t0002	282	2	2	0	0	0	0	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	t0003	282	2	0	0	2	0	0	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	t0004	282	1	1	0	0	0	0	copy fasta	CD52	chr1	26312958	26325523
CD53_chr1_110868148_110904922	0/1	t0001	848	155	27	27	66	9	25	copy fasta	CD53	chr1	110868148	110904922