JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD53_chr1_110868148_110904922	1/0	t0002	846	100	51	12	29	1	6	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0003	848	68	4	18	37	1	8	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0004	848	43	3	3	32	0	5	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0005	846	43	0	3	34	2	4	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0006	848	19	5	4	6	3	1	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0007	846	5	0	3	2	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0008	846	3	0	0	2	0	1	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0009	846	1	0	0	1	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0010	848	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0011	848	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0012	848	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0013	846	1	0	0	1	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	t0014	848	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922
CD55_chr1_207316678_207365966	1/1	t0001	1445	336	72	62	154	12	34	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0002	1445	5	5	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0003	1445	4	4	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0004	1445	3	3	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0005	1445	2	2	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0006	1445	2	0	0	2	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0007	1445	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0008	1445	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0009	1445	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	t0010	1445	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD58_chr1_116509534_116576026	1/1	t0001	334	285	80	60	99	6	38	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	t0002	334	1	1	0	0	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	t0003	334	1	0	0	1	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	t0004	334	1	1	0	0	0	0	copy fasta	CD58	chr1	116509534	116576026
CD59_chr11_33698010_33741423	1/1	t0001	7177	49	9	9	23	2	4	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0002	7177	43	10	1	27	0	5	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0003	7177	41	3	13	11	4	10	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0004	7178	32	5	7	15	0	5	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0005	7177	28	0	9	13	2	4	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0006	7179	17	1	5	3	3	5	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0007	7177	10	0	0	10	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0008	7172	8	7	1	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0009	7177	8	0	0	8	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0010	7176	5	3	0	0	0	2	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0011	7177	5	1	2	0	0	2	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0012	7178	5	0	0	5	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0013	7177	5	1	0	4	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0014	7176	4	4	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0015	7177	4	2	2	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0016	7177	3	2	1	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0017	7178	3	3	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0018	7177	3	0	1	2	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0019	7178	3	0	0	3	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0020	7172	3	3	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0021	7176	3	0	0	1	1	1	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0022	7178	3	0	0	3	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0023	7179	2	1	1	0	0	0	copy fasta	CD59	chr11	33698010	33741423