JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD59_chr11_33698010_33741423	0/0	t0074	7179	1	1	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0075	7180	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0076	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0077	7177	1	0	0	0	0	1	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0078	7176	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0079	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0080	7175	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0081	7177	1	1	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0082	7178	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0083	7178	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0084	7178	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0085	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0086	7177	1	0	0	0	0	1	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0087	7177	1	0	0	0	0	1	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0088	7177	1	0	0	0	0	1	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0089	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0090	7177	1	0	1	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0091	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0092	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0093	7177	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0094	7176	1	1	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0095	7179	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0096	7178	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	t0097	7179	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD5L_chr1_157825911_157846808	1/1	t0001	1161	265	42	53	142	11	15	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0002	1161	85	36	13	16	3	17	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0003	1161	53	0	9	41	2	1	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0004	1161	9	9	0	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0005	1161	8	7	1	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0006	1161	4	0	0	4	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0007	1161	1	0	0	1	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0008	1161	1	1	0	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0009	1161	1	1	0	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	t0010	1161	1	0	0	0	0	1	copy fasta	CD5L	chr1	157825911	157846808
CD5_chr11_61097489_61132852	0/1	t0001	1648	153	47	32	40	11	22	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	1/0	t0002	1640	30	0	21	0	5	3	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0003	1641	24	12	7	1	2	2	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0004	1640	22	21	1	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0005	1644	4	4	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0006	1648	4	3	1	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0007	1641	2	2	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0008	1648	1	0	0	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0009	1640	1	0	0	0	0	1	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0010	1648	1	0	1	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0011	1636	1	0	1	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	t0012	1641	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD63_chr12_55720323_55734009	1/1	t0001	307	422	96	74	192	14	44	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	t0002	307	2	0	0	2	0	0	copy fasta	CD63	chr12	55720323	55734009
CD68_chr17_7574638_7587111	0/0	t0001	641	62	5	14	32	6	5	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/1	t0002	643	44	2	12	22	2	5	copy fasta	CD68	chr17	7574638	7587111