JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD68_chr17_7574638_7587111	1/0	t0003	641	43	11	5	15	3	8	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0004	644	40	9	4	22	0	5	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0005	640	36	1	6	23	3	3	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0006	644	34	2	9	20	1	2	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0007	640	28	13	4	9	1	1	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0008	642	27	2	6	11	2	6	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0009	643	23	9	6	8	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0010	642	21	3	5	11	0	2	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0011	644	20	13	4	3	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0012	645	10	7	0	3	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0013	642	8	7	1	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0014	641	8	0	0	8	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0015	645	7	0	2	5	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0016	644	6	0	0	6	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0017	640	3	3	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0018	644	2	2	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0019	641	2	2	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0020	641	2	2	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0021	640	1	0	0	1	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0022	625	1	0	0	1	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0023	640	1	0	0	0	0	1	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0024	645	1	1	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0025	643	1	1	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0026	641	1	1	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0027	641	1	0	1	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	t0028	642	1	0	1	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD69_chr12_9747486_9765901	0/0	t0001	1077	168	6	25	120	6	11	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0002	1077	160	14	29	89	7	21	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0003	1071	38	15	14	0	3	6	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	1/0	t0004	1077	29	24	4	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/1	t0005	1077	22	7	8	2	0	4	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0006	1077	15	15	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0007	1077	4	3	1	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0008	1077	4	4	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0009	1077	2	0	0	0	0	2	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0010	1077	2	2	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0011	1077	1	0	0	1	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0012	1077	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0013	1071	1	0	1	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0014	1077	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0015	1077	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	t0016	1077	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD6_chr11_60966680_61025377	1/1	t0001	1246	277	72	61	93	12	37	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0002	1246	6	5	1	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0003	1246	3	1	1	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0004	1246	3	3	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0005	1246	2	2	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0006	1246	2	2	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0007	1246	2	2	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0008	1246	1	0	1	0	0	0	copy fasta	CD6	chr11	60966680	61025377