JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD6_chr11_60966680_61025377	0/0	t0009	1246	1	0	0	1	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0010	1246	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0011	1246	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0012	1246	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0013	1246	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	t0014	1246	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD70_chr19_6580839_6596150	1/1	t0001	330	408	85	61	208	10	42	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	t0002	330	44	11	20	0	8	5	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	t0003	330	1	0	0	0	0	1	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	t0004	330	1	1	0	0	0	0	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	t0005	330	1	1	0	0	0	0	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	t0006	330	1	0	1	0	0	0	copy fasta	CD70	chr19	6580839	6596150
CD72_chr9_35604982_35623413	1/1	t0001	452	385	90	67	165	14	47	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	t0002	452	3	2	1	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	t0003	452	1	0	0	1	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	t0004	452	1	0	0	0	0	1	copy fasta	CD72	chr9	35604982	35623413
CD74_chr5_150396639_150417910	1/1	t0001	763	321	79	77	110	15	38	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0002	763	39	0	0	37	1	1	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0003	763	20	0	0	16	0	4	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0004	763	11	2	1	5	0	3	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0005	763	8	8	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0006	763	5	5	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0007	763	2	2	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0008	795	1	1	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	t0009	763	1	1	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD79A_chr19_41872279_41886372	1/1	t0001	419	390	78	66	190	14	40	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	t0002	419	2	0	0	2	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79B_chr17_63923740_63937331	1/0	t0001	557	166	35	33	77	3	17	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0002	557	116	6	19	74	7	10	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/1	t0003	557	56	23	9	9	6	8	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0004	557	35	31	3	1	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0005	557	2	0	0	0	0	2	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0006	557	1	1	0	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0007	557	1	1	0	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0008	557	1	0	0	0	0	1	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0009	557	1	1	0	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	t0010	557	1	0	0	1	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD7_chr17_82309873_82322608	1/0	t0001	562	382	81	72	176	15	37	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/1	t0002	562	30	13	8	0	2	6	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	t0003	562	1	0	0	0	1	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	t0004	562	1	0	0	0	0	1	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	t0005	562	1	1	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	t0006	562	1	1	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD80_chr3_119519293_119564614	1/1	t0001	1871	67	11	21	24	4	5	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0002	1871	59	2	23	25	3	6	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0003	1871	59	0	12	43	2	2	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0004	1871	50	15	2	31	0	2	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0005	1871	43	4	13	18	3	5	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0006	1871	38	31	3	4	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0007	1871	30	4	4	15	1	6	copy fasta	CD80	chr3	119519293	119564614