JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD80_chr3_119519293_119564614	0/0	t0008	1871	13	0	2	5	1	5	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0009	1871	11	0	0	10	0	1	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0010	1868	11	7	0	0	0	4	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0011	1871	7	0	1	4	0	2	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0012	1871	7	2	0	5	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0013	1871	6	5	0	1	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0014	1866	4	4	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0015	1868	4	4	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0016	1868	3	3	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0017	1871	3	0	1	0	0	2	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0018	1868	2	0	0	1	0	1	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0019	1871	2	0	0	2	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0020	1871	2	0	0	0	0	2	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0021	1868	1	0	0	0	0	1	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0022	1871	1	1	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0023	1866	1	1	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0024	1868	1	0	0	0	0	1	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	t0025	1868	1	0	0	0	0	1	copy fasta	CD80	chr3	119519293	119564614
CD81_chr11_2372310_2402397	1/1	t0001	772	283	48	63	121	12	37	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0002	773	27	18	1	8	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0003	772	20	0	0	20	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0004	772	15	13	2	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0005	771	7	6	1	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0006	772	6	0	0	6	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0007	773	5	1	1	2	0	1	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0008	773	4	0	0	4	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0009	772	4	3	0	0	1	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0010	772	3	0	3	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0011	772	2	0	2	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0012	773	2	0	0	0	0	2	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0013	765	2	2	0	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0014	772	1	0	0	0	0	1	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0015	773	1	0	0	1	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0016	772	1	0	0	0	0	1	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0017	772	1	0	0	0	1	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0018	752	1	1	0	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0019	764	1	0	1	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0020	773	1	0	0	1	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	t0021	772	1	0	0	1	0	0	copy fasta	CD81	chr11	2372310	2402397
CD82_chr11_44560663_44625358	0/1	t0001	1408	109	8	32	44	8	16	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0002	1407	65	5	15	40	1	4	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0003	1409	56	7	17	19	4	9	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0004	1410	34	26	0	7	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0005	1409	12	1	1	9	1	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0006	1409	8	0	7	0	1	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0007	1411	7	5	0	2	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0008	1408	6	6	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0009	1408	5	0	1	0	0	4	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0010	1406	5	0	0	4	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0011	1410	5	5	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358