JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD82_chr11_44560663_44625358	1/0	t0012	1409	5	4	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0013	1408	4	0	1	3	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0014	1409	4	3	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0015	1407	4	4	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0016	1407	3	2	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0017	1410	3	3	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0018	1410	2	0	0	0	1	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0019	1408	2	0	1	0	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0020	1409	2	0	0	2	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0021	1409	1	0	0	0	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0022	1408	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0023	1409	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0024	1409	1	0	0	0	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0025	1408	1	0	0	0	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0026	1408	1	0	0	0	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0027	1408	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0028	1410	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0029	1410	1	0	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0030	1408	1	0	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0031	1410	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0032	1410	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0033	1410	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0034	1407	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0035	1407	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0036	1408	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0037	1409	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0038	1409	1	0	0	0	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0039	1410	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0040	1409	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0041	1410	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0042	1409	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0043	1410	1	0	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0044	1408	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0045	1411	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0046	1408	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0047	1407	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0048	1411	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0049	1409	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0050	1408	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	t0051	1408	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD83_chr6_14112772_14141906	0/0	t0001	1711	126	11	23	68	4	20	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0002	1711	115	4	14	75	4	18	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0003	1711	62	25	14	20	1	2	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0004	1711	58	37	12	7	2	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0005	1711	19	1	0	17	0	1	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0006	1711	17	0	10	0	3	4	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	1/0	t0007	1711	7	1	1	3	1	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/1	t0008	1711	6	1	2	0	0	2	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0009	1711	4	3	1	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0010	1711	4	3	1	0	0	0	copy fasta	CD83	chr6	14112772	14141906