JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD83_chr6_14112772_14141906	0/0	t0011	1711	4	4	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0012	1711	3	0	2	0	0	1	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0013	1711	2	2	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0014	1711	2	1	0	0	0	1	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0015	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0016	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0017	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0018	1711	1	0	0	0	1	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0019	1711	1	0	0	0	0	1	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0020	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0021	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0022	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	t0023	1711	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD84_chr1_160536098_160584496	0/1	t0001	7228	78	1	17	48	4	7	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	1/0	t0002	7218	56	15	18	18	1	3	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0003	7225	37	3	6	23	2	3	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0004	7222	24	5	5	14	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0005	7231	17	1	4	9	0	3	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0006	7228	13	2	3	7	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0007	7224	10	0	5	1	0	4	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0008	7218	8	7	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0009	7237	7	5	0	1	1	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0010	7218	6	6	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0011	7225	4	0	0	4	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0012	7223	4	4	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0013	7226	4	0	4	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0014	7234	4	4	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0015	7229	4	0	0	3	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0016	7234	4	0	1	3	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0017	7217	4	3	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0018	7218	3	3	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0019	7220	3	3	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0020	7221	3	0	0	3	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0021	7227	3	0	1	2	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0022	7221	3	3	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0023	7218	3	2	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0024	7222	2	2	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0025	7221	2	0	0	2	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0026	7221	2	2	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0027	7219	2	0	0	0	0	2	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0028	7225	2	0	0	2	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0029	7228	2	0	0	0	0	2	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0030	7228	2	0	0	0	0	2	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0031	7224	2	2	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0032	7218	2	0	0	2	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0033	7218	2	0	0	0	2	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0034	7234	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0035	7218	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0036	7222	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0037	7222	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496