JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD84_chr1_160536098_160584496	0/0	t0038	7225	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0039	7225	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0040	7225	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0041	7222	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0042	7227	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0043	7225	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0044	7222	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0045	7227	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0046	7230	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0047	7222	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0048	7225	1	0	0	0	1	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0049	7228	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0050	7235	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0051	7226	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0052	7222	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0053	7223	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0054	7223	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0055	7216	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0056	7216	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0057	7231	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0058	7234	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0059	7234	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0060	7237	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0061	7234	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0062	7221	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0063	7218	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0064	7218	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0065	7221	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0066	7223	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0067	7226	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0068	7225	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0069	7228	1	0	0	0	1	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0070	7235	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0071	7231	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0072	7238	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0073	7228	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0074	7227	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0075	7230	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0076	7228	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0077	7218	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0078	7218	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0079	7219	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0080	7218	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0081	7218	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0082	7218	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0083	7221	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0084	7219	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0085	7224	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0086	7228	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0087	7219	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496