JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD84_chr1_160536098_160584496	0/0	t0088	7225	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0089	7218	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0090	7228	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	t0091	7228	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD86_chr3_122050362_122126136	0/0	t0001	1729	134	57	28	33	6	10	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0002	1728	117	12	15	63	4	23	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/1	t0003	1729	30	13	6	4	2	4	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0004	1729	4	0	4	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0005	1728	3	0	0	1	0	2	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0006	1728	3	0	3	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0007	1729	3	0	3	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0008	1730	3	2	1	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0009	1729	2	2	0	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0010	1730	2	0	0	0	0	2	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0011	1729	1	0	0	1	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	1/0	t0012	1731	1	0	0	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	t0013	1730	1	0	0	0	0	1	copy fasta	CD86	chr3	122050362	122126136
CD8A_chr2_86779610_86795913	1/1	t0001	1399	288	65	61	116	11	33	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0002	1401	67	13	9	38	3	4	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0003	1399	5	2	3	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0004	1401	4	4	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0005	1399	4	4	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0006	1399	2	2	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0007	1399	2	2	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0008	1401	1	1	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0009	1399	1	1	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0010	1399	1	0	0	0	0	1	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0011	1399	1	1	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0012	1399	1	1	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	t0013	1401	1	0	1	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8B2_chr2_106482364_106516095	0/0	t0001	4222	120	23	30	39	5	23	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0002	4222	71	0	16	49	0	6	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/1	t0003	4219	47	20	14	1	7	4	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0004	4222	37	10	8	12	0	7	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0005	4219	15	8	4	0	2	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	1/0	t0006	4219	13	11	1	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0007	4222	10	0	1	9	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0008	4215	5	5	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0009	4222	4	4	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0010	4222	3	0	2	0	1	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0011	4219	3	3	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0012	4219	3	3	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0013	4222	2	0	0	2	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0014	4219	2	2	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0015	4222	2	2	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0016	4222	1	1	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0017	4215	1	0	1	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0018	4215	1	0	0	0	0	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0019	4222	1	0	0	0	0	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0020	4222	1	0	0	0	1	0	copy fasta	CD8B2	chr2	106482364	106516095