JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD8B2_chr2_106482364_106516095	0/0	t0021	4222	1	0	0	0	0	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0022	4219	1	1	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0023	4219	1	1	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0024	4222	1	0	0	1	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0025	4222	1	0	1	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0026	4222	1	0	0	1	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0027	4222	1	0	0	1	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	t0028	4222	1	0	0	1	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B_chr2_86833167_86866886	0/0	t0001	4162	113	20	12	64	3	14	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	1/1	t0002	4162	75	7	19	34	3	10	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0003	4159	68	2	22	35	3	6	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0004	4162	35	3	6	22	0	4	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0005	4162	20	18	2	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0006	4162	11	8	2	0	1	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0007	4162	8	8	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0008	4162	5	4	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0009	4162	5	5	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0010	4162	4	0	3	0	1	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0011	4162	3	1	1	0	1	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0012	4162	3	0	0	2	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0013	4162	3	3	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0014	4162	3	0	0	3	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0015	4162	2	1	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0016	4162	2	0	2	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0017	4162	2	2	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0018	4162	2	0	1	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0019	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0020	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0021	4146	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0022	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0023	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0024	4159	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0025	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0026	4162	1	0	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0027	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0028	4159	1	0	0	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0029	4159	1	0	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0030	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0031	4159	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0032	4159	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0033	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0034	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0035	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0036	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0037	4162	1	0	0	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0038	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0039	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0040	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0041	4162	1	0	0	0	1	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0042	4162	1	0	0	0	1	0	copy fasta	CD8B	chr2	86833167	86866886