JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD8B_chr2_86833167_86866886	0/0	t0043	4162	1	1	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0044	4162	1	0	0	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0045	4162	1	0	0	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	t0046	4162	1	0	0	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD93_chr20_23074360_23091324	0/0	t0001	4717	129	15	31	63	6	14	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0002	4723	28	11	5	7	1	4	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0003	4717	24	3	8	10	0	3	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0004	4717	21	3	7	8	0	3	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0005	4717	20	0	0	18	0	2	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0006	4717	14	6	0	8	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0007	4719	14	2	1	9	2	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0008	4717	12	0	0	12	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0009	4721	7	0	0	7	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0010	4722	5	4	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0011	4711	4	1	2	0	1	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0012	4723	4	0	2	0	1	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0013	4721	4	4	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0014	4715	4	0	0	4	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0015	4721	4	0	0	1	0	3	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0016	4719	4	3	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0017	4719	3	3	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0018	4727	3	0	3	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0019	4723	3	3	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0020	4723	3	2	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0021	4723	3	2	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0022	4723	3	3	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0023	4721	3	3	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0024	4719	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0025	4715	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0026	4721	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0027	4717	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0028	4725	2	1	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0029	4719	2	2	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0030	4719	2	0	0	2	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0031	4717	2	2	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0032	4717	2	0	0	2	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0033	4721	2	2	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0034	4718	2	0	0	2	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0035	4722	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0036	4722	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0037	4720	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0038	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0039	4715	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0040	4713	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0041	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0042	4721	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0043	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0044	4725	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0045	4723	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0046	4723	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324