JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD93_chr20_23074360_23091324	0/0	t0047	4723	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0048	4721	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	1/0	t0049	4723	1	0	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0050	4717	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0051	4717	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0052	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/1	t0053	4717	1	0	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0054	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0055	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0056	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0057	4711	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0058	4723	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0059	4723	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0060	4721	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0061	4721	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0062	4721	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0063	4719	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0064	4715	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0065	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0066	4723	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0067	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0068	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0069	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0070	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0071	4723	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0072	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0073	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0074	4719	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0075	4719	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0076	4719	1	0	0	0	1	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0077	4717	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0078	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0079	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0080	4717	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0081	4717	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0082	4717	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0083	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0084	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0085	4717	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0086	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0087	4717	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0088	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0089	4715	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0090	4713	1	0	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0091	4711	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0092	4721	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0093	4717	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0094	4718	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	t0095	4714	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD96_chr3_111537197_111657372	0/0	t0001	2619	159	20	31	79	8	21	copy fasta	CD96	chr3	111537197	111657372