JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD96_chr3_111537197_111657372	0/0	t0002	2618	48	10	5	27	0	6	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0003	2619	16	13	0	2	0	1	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0004	2618	14	1	7	2	1	3	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0005	2618	12	10	2	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	1/0	t0006	2619	11	6	1	1	0	2	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/1	t0007	2619	7	1	3	0	2	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0008	2619	6	0	4	0	2	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0009	2619	4	3	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0010	2619	4	0	0	4	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0011	2619	2	2	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0012	2619	2	0	0	2	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0013	2619	2	2	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0014	2619	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0015	2619	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0016	2619	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0017	2619	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0018	2619	1	0	0	0	0	1	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0019	2619	1	0	0	0	1	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0020	2618	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0021	2619	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0022	2660	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0023	2644	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0024	2640	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0025	2619	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	t0026	2618	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD99L2_chrX_150761336_150903668	1/0	t0001	2779	94	12	15	57	4	5	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0002	2779	21	3	10	4	2	2	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0003	2779	11	0	0	6	0	5	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/1	t0004	2779	10	1	2	4	0	2	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0005	2779	6	5	1	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0006	2779	5	1	1	0	2	1	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0007	2779	4	4	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0008	2782	4	4	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0009	2779	4	4	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0010	2779	4	0	2	0	1	1	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0011	2779	3	3	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0012	2779	3	3	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0013	2779	3	0	0	0	0	3	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0014	2782	3	3	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0015	2779	2	0	1	0	1	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0016	2779	2	2	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0017	2782	2	2	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0018	2779	2	0	0	2	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0019	2779	2	1	0	0	0	1	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0020	2779	2	0	0	2	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0021	2779	2	0	0	0	2	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0022	2779	1	0	0	1	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0023	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0024	2782	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0025	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668