JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CD99L2_chrX_150761336_150903668	0/0	t0026	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0027	2779	1	0	0	0	1	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0028	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0029	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0030	2779	1	0	0	0	0	1	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0031	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0032	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0033	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0034	2780	1	0	0	0	0	1	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0035	2782	1	0	1	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0036	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0037	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0038	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0039	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0040	2779	1	0	0	1	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0041	2779	1	0	0	1	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0042	2779	1	0	1	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0043	2779	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	t0044	2782	1	0	1	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99_chrX_2686295_2746309	1/1	t0001	572	188	45	38	81	6	16	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0002	573	19	5	4	8	1	1	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0003	572	5	0	2	3	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0004	572	4	4	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0005	572	3	3	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0006	572	2	2	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0007	572	2	1	0	0	1	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0008	571	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0009	573	1	1	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0010	572	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0011	572	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	t0012	573	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD9_chr12_6195400_6243266	1/1	t0001	539	329	56	57	170	7	37	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	t0002	539	48	35	5	4	1	3	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	t0003	539	1	1	0	0	0	0	copy fasta	CD9	chr12	6195400	6243266
CDADC1_chr13_49242925_49298485	0/1	t0001	1842	124	21	21	67	3	11	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0002	1842	115	7	28	56	9	15	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0003	1842	50	7	4	31	0	8	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	1/0	t0004	1842	27	22	4	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0005	1842	27	14	5	0	2	6	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0006	1840	9	8	1	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0007	1842	8	8	0	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0008	1842	1	0	0	0	0	1	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0009	1842	1	0	0	1	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0010	1842	1	0	1	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0011	1842	1	0	1	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0012	1842	1	0	0	0	0	1	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0013	1842	1	0	0	1	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0014	1842	1	0	1	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	t0015	1842	1	1	0	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDAN1_chr15_42718544_42742128	1/1	t0001	974	164	8	35	94	9	16	copy fasta	CDAN1	chr15	42718544	42742128