JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDAN1_chr15_42718544_42742128	0/0	t0002	974	142	61	11	47	4	19	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0003	971	32	19	2	8	0	3	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0004	956	2	0	0	0	0	2	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0005	974	1	0	0	0	1	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0006	974	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0007	974	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0008	974	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0009	974	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0010	974	1	0	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0011	974	1	0	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	t0012	971	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDA_chr1_20584097_20623903	1/0	t0001	369	198	26	33	111	4	23	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	t0002	369	105	27	14	47	7	10	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/1	t0003	368	91	30	20	27	3	10	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	t0004	370	20	8	7	4	0	1	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	t0005	369	1	1	0	0	0	0	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	t0006	369	1	1	0	0	0	0	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	t0007	369	1	0	0	1	0	0	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	t0008	368	1	1	0	0	0	0	copy fasta	CDA	chr1	20584097	20623903
CDC123_chr10_12191188_12255589	0/1	t0001	311	209	55	39	85	7	22	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	1/0	t0002	311	54	19	5	20	2	7	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0003	311	54	1	14	29	5	5	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0004	311	31	9	0	20	0	2	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0005	311	23	1	8	13	0	1	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0006	311	11	3	6	0	1	1	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0007	311	4	0	3	1	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0008	311	3	0	0	3	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0009	311	1	0	0	0	1	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0010	311	1	0	1	0	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	t0011	311	1	0	0	1	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC14A_chr1_100347506_100525277	0/0	t0001	2447	106	9	23	60	5	9	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/1	t0002	2447	75	2	16	38	4	14	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0003	2447	32	22	1	8	0	1	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0004	2447	15	5	3	4	0	3	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0005	2447	14	6	2	1	0	5	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0006	2447	13	9	2	0	0	2	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0007	2447	13	6	0	7	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0008	2447	11	11	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0009	2447	5	0	4	0	1	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0010	2447	5	3	1	0	0	1	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0011	2444	3	3	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0012	2444	2	1	1	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0013	2447	2	0	1	1	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0014	2447	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0015	2447	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0016	2444	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0017	2447	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0018	2447	1	0	0	1	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	1/0	t0019	2447	1	0	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0020	2444	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277