JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC14A_chr1_100347506_100525277	0/0	t0021	2447	1	0	0	0	0	1	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0022	2447	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	t0023	2447	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14B_chr9_96495113_96624843	0/0	t0001	4105	115	25	30	39	9	12	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0002	4121	30	16	6	3	1	4	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0003	4104	24	0	8	5	2	9	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0004	4119	18	16	2	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	1/1	t0005	4106	6	1	2	1	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0006	4120	4	3	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0007	4119	4	3	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0008	4105	3	0	0	3	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0009	4105	2	1	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0010	4105	2	2	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0011	4120	2	2	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0012	4122	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0013	4105	1	0	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0014	4122	1	0	0	0	0	1	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0015	4119	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0016	4119	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0017	4119	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0018	4119	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0019	4121	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0020	4120	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	t0021	4105	1	0	0	1	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14C_chr7_48919547_48932454	0/1	t0001	1564	238	19	31	145	8	34	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	1/0	t0002	1565	85	12	26	36	2	8	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0003	1563	51	15	7	21	3	5	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0004	1564	15	0	1	14	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0005	1564	14	13	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0006	1564	9	8	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0007	1564	6	0	4	0	1	1	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0008	1564	6	2	3	0	1	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0009	1564	5	5	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0010	1564	3	0	0	3	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0011	1564	3	3	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0012	1565	3	3	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0013	1564	2	1	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0014	1564	2	2	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0015	1565	2	0	1	0	1	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0016	1565	2	0	0	2	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0017	1565	2	2	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0018	1564	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0019	1564	1	0	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0020	1564	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0021	1565	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0022	1563	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0023	1564	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0024	1564	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0025	1564	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0026	1563	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454