JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC14C_chr7_48919547_48932454	0/0	t0027	1565	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0028	1563	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0029	1565	1	0	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0030	1566	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	t0031	1564	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC16_chr13_114229897_114277723	1/1	t0001	469	217	19	39	123	16	18	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0002	475	113	44	17	32	0	20	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0003	469	14	0	7	6	0	1	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0004	469	8	5	3	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0005	475	6	4	2	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0006	475	6	5	1	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0007	481	4	4	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0008	481	3	3	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0009	469	2	0	2	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0010	475	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0011	469	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0012	481	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0013	469	1	0	0	1	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0014	469	1	0	0	0	0	1	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0015	475	1	0	1	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	t0016	454	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC20B_chr5_55107971_55178177	0/0	t0001	1425	148	35	28	61	6	18	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	1/0	t0002	1425	73	20	7	39	1	5	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/1	t0003	1425	63	1	6	36	5	14	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0004	1425	19	15	2	0	2	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0005	1425	8	2	4	0	0	2	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0006	1425	4	1	3	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0007	1425	2	2	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0008	1425	2	2	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0009	1425	2	0	0	2	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0010	1425	2	2	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0011	1425	1	0	0	1	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0012	1425	1	1	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0013	1425	1	1	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0014	1425	1	0	0	1	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0015	1425	1	1	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0016	1425	1	1	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	t0017	1425	1	0	0	0	0	1	copy fasta	CDC20B	chr5	55107971	55178177
CDC20_chr1_43353981_43368203	1/1	t0001	150	351	81	68	150	12	38	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	t0002	150	17	13	2	0	0	2	copy fasta	CDC20	chr1	43353981	43368203
CDC23_chr5_138182650_138218323	1/0	t0001	1340	250	77	44	86	11	31	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/1	t0002	1340	129	7	30	73	5	13	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0003	1340	3	3	0	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0004	1340	2	2	0	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0005	1340	2	0	0	2	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0006	1340	2	0	2	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0007	1340	1	0	1	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0008	1340	1	0	1	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0009	1340	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	t0010	1340	1	1	0	0	0	0	copy fasta	CDC23	chr5	138182650	138218323