JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC25A_chr3_48152146_48193417	1/0	t0001	2270	246	48	50	107	10	30	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/1	t0002	2270	58	5	17	26	2	7	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0003	2270	11	11	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0004	2270	9	7	2	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0005	2270	5	1	0	2	0	2	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0006	2270	2	2	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0007	2270	2	2	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0008	2270	2	0	0	2	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0009	2270	1	0	0	0	0	1	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0010	2270	1	1	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0011	2270	1	1	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0012	2270	1	0	1	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	t0013	2270	1	0	0	1	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25B_chr20_3791310_3811115	0/0	t0001	1379	95	21	15	47	2	10	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0002	1378	63	3	14	27	4	15	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0003	1378	56	20	6	22	2	6	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0004	1380	51	0	6	37	3	5	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	1/0	t0005	1377	34	3	7	16	2	5	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0006	1381	29	3	5	21	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0007	1377	23	9	5	6	0	3	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0008	1380	8	7	1	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0009	1379	6	6	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0010	1377	4	4	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0011	1378	4	4	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0012	1380	4	0	0	4	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0013	1379	4	0	2	1	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0014	1377	3	3	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0015	1378	3	0	2	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0016	1379	3	0	0	3	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0017	1379	3	0	1	0	1	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0018	1377	3	0	0	3	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0019	1378	3	0	0	2	1	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0020	1377	2	0	1	0	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0021	1378	2	2	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0022	1356	2	0	2	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0023	1378	2	2	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/1	t0024	1357	2	0	1	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0025	1379	2	0	2	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0026	1381	2	0	0	2	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0027	1380	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0028	1378	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0029	1378	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0030	1378	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0031	1378	1	0	0	0	1	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0032	1378	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0033	1379	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0034	1379	1	0	1	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0035	1379	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0036	1379	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0037	1379	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115