Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS3_chr4_72275969_72574221	1/0	t0004	2627	12	1	1	8	0	1	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0005	2628	9	6	0	2	0	1	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0006	2623	4	4	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0007	2628	3	2	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0008	2627	2	2	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0009	2628	2	2	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0010	2628	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0011	2628	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0012	2623	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0013	2628	1	0	0	0	0	1	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0014	2627	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0015	2626	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0016	2627	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0017	2626	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0018	2630	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0019	2627	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0020	2627	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0021	2627	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0022	2627	1	0	0	0	0	1	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0023	2627	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0024	2622	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0025	2622	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0026	2631	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0027	2628	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0028	2627	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0029	2628	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0030	2628	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0031	2628	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0032	2628	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0033	2628	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS4_chr1_161179302_161204054	1/0	t0001	7264	24	2	8	4	4	5	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0002	7265	17	1	3	5	3	5	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0003	7262	10	10	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0004	7279	10	0	3	4	0	3	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0005	7263	9	9	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0006	7291	7	4	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0007	7289	5	2	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0008	7283	5	0	0	5	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0009	7280	5	1	0	4	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0010	7277	5	0	0	5	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0011	7269	5	0	0	5	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0012	7274	4	0	0	3	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0013	7294	4	0	0	4	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0014	7286	4	1	2	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0015	7287	4	0	0	4	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0016	7275	3	0	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0017	7273	3	0	1	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0018	7266	3	1	2	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0019	7268	3	0	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0020	7301	3	0	1	1	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054