JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC25B_chr20_3791310_3811115	0/0	t0038	1380	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0039	1381	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0040	1379	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0041	1377	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0042	1377	1	0	0	0	1	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0043	1377	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0044	1378	1	0	1	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0045	1378	1	0	1	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0046	1378	1	0	0	0	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0047	1379	1	0	1	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0048	1379	1	0	0	0	1	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	t0049	1377	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25C_chr5_138280269_138336804	1/1	t0001	672	331	80	60	146	12	31	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0002	672	21	0	6	4	2	9	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0003	672	5	0	0	5	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0004	672	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0005	672	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0006	672	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0007	672	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	t0008	672	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC26_chr9_113261992_113280572	1/1	t0001	614	235	33	56	111	11	22	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0002	614	158	37	16	81	4	20	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0003	614	26	11	2	11	0	2	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0004	614	4	4	0	0	0	0	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0005	614	3	3	0	0	0	0	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0006	614	3	0	2	0	1	0	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0007	614	2	0	0	2	0	0	copy fasta	CDC26	chr9	113261992	113280572
CDC26_chr9_113261992_113280572	0/0	t0008	614	1	0	0	1	0	0	copy fasta	CDC26	chr9	113261992	113280572
CDC27_chr17_47112703_47194295	1/0	t0001	3356	182	38	28	80	6	29	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0002	3356	68	22	10	22	4	10	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/1	t0003	3356	41	3	16	17	0	4	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0004	3356	19	0	6	13	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0005	3356	12	9	3	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0006	3356	11	0	8	0	3	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0007	3357	5	5	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0008	3352	4	4	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0009	3352	2	2	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0010	3356	2	2	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0011	3356	2	0	0	2	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0012	3356	1	0	0	1	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0013	3356	1	0	0	1	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0014	3356	1	0	1	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0015	3356	1	0	0	0	0	1	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0016	3356	1	0	0	0	1	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0017	3356	1	0	0	1	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0018	3356	1	0	0	1	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0019	3356	1	1	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0020	3356	1	1	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	t0021	3356	1	1	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC34_chr19_526760_547087	1/1	t0001	708	144	63	20	40	8	11	copy fasta	CDC34	chr19	526760	547087