JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC34_chr19_526760_547087	0/0	t0002	708	138	3	37	75	5	18	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0003	708	17	3	1	10	0	3	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0004	707	7	7	0	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0005	708	6	6	0	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0006	708	5	2	2	0	1	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0007	708	5	0	0	5	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0008	708	1	0	1	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0009	708	1	0	0	1	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0010	708	1	1	0	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0011	708	1	1	0	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0012	708	1	0	0	1	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	t0013	708	1	0	1	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC37L1_chr9_4674569_4713399	1/1	t0001	2487	134	15	27	68	6	16	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0002	2481	126	42	28	41	3	12	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0003	2482	79	0	5	65	0	9	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0004	2487	12	0	2	5	1	4	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0005	2487	11	0	0	11	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0006	2481	9	8	1	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0007	2482	5	5	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0008	2482	5	4	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0009	2487	5	0	4	0	0	1	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0010	2487	5	3	0	2	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0011	2481	3	3	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0012	2487	2	2	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0013	2482	2	2	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0014	2482	2	0	0	2	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0015	2482	2	1	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0016	2480	2	0	0	2	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0017	2486	2	2	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0018	2487	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0019	2486	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0020	2487	1	0	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0021	2486	1	0	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0022	2487	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0023	2487	1	0	1	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0024	2512	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0025	2512	1	0	1	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0026	2481	1	0	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0027	2481	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0028	2481	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0029	2486	1	0	1	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0030	2481	1	0	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	t0031	2487	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37_chr19_10386133_10408542	1/1	t0001	482	375	89	62	169	9	44	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	t0002	482	5	5	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	t0003	482	3	0	2	0	1	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	t0004	482	2	0	0	0	0	2	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	t0005	482	1	1	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	t0006	482	1	1	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	t0007	482	1	0	0	1	0	0	copy fasta	CDC37	chr19	10386133	10408542