JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42BPG_chr11_64818052_64849653	0/0	t0023	1506	2	0	0	2	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0024	1509	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0025	1510	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0026	1510	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0027	1509	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0028	1509	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0029	1509	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0030	1507	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0031	1506	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0032	1507	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0033	1505	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0034	1506	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0035	1507	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0036	1507	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0037	1507	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0038	1506	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0039	1507	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0040	1506	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0041	1506	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0042	1506	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0043	1507	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0044	1506	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0045	1506	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0046	1506	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0047	1508	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0048	1510	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0049	1510	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	t0050	1509	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42EP1_chr22_37555480_37574405	1/1	t0001	973	424	89	64	205	16	48	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0002	973	7	0	0	7	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0003	973	3	0	3	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0004	973	2	2	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0005	973	2	0	2	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0006	973	1	0	0	0	1	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0007	973	1	0	0	0	1	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0008	973	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0009	973	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0010	973	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0011	973	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0012	973	1	0	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0013	973	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0014	973	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	t0015	973	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP2_chr11_65309866_65327417	0/1	t0001	1331	265	62	56	96	17	33	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	1/0	t0002	1331	60	27	8	17	1	6	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0003	1331	4	4	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0004	1331	2	0	0	2	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0005	1331	2	0	0	2	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0006	1331	1	1	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0007	1331	1	1	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417