JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42EP2_chr11_65309866_65327417	0/0	t0008	1331	1	0	0	0	0	1	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0009	1331	1	1	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	t0010	1331	1	0	0	1	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP3_chr2_37636944_37676642	1/1	t0001	4332	120	20	35	39	9	15	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0002	4327	93	7	21	61	0	4	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0003	4326	19	1	4	8	2	4	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0004	4333	19	0	0	19	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0005	4327	16	16	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0006	4328	16	4	4	5	0	3	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0007	4326	14	0	0	5	0	9	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0008	4332	13	0	1	12	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0009	4326	11	8	0	0	3	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0010	4333	10	2	5	3	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0011	4328	7	7	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0012	4328	6	0	0	5	0	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0013	4333	5	4	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0014	4306	5	5	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0015	4327	5	4	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0016	4330	4	3	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0017	4330	4	4	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0018	4333	4	0	0	4	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0019	4326	3	0	0	3	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0020	4331	3	1	0	0	1	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0021	4334	3	0	0	3	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0022	4327	3	0	0	3	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0023	4326	2	0	0	2	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0024	4333	2	0	0	2	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0025	4332	2	2	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0026	4332	2	2	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0027	4331	2	2	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0028	4327	2	0	0	2	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0029	4326	2	0	0	1	0	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0030	4328	2	1	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0031	4332	2	0	0	2	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0032	4331	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0033	4326	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0034	4332	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0035	4333	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0036	4333	1	0	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0037	4332	1	0	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0038	4332	1	0	0	0	1	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0039	4332	1	0	0	0	0	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0040	4332	1	0	0	0	0	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0041	4331	1	0	0	0	0	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0042	4334	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0043	4332	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0044	4327	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0045	4329	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0046	4327	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0047	4328	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642