JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42EP3_chr2_37636944_37676642	0/0	t0048	4329	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0049	4327	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0050	4327	1	0	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0051	4326	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0052	4326	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0053	4327	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0054	4327	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0055	4330	1	0	0	0	0	1	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0056	4329	1	0	1	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0057	4326	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0058	4326	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0059	4333	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	t0060	4333	1	0	0	1	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP4_chr17_73278624_73317001	0/1	t0001	2028	121	26	25	45	6	18	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0002	2029	95	11	20	53	0	11	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	1/0	t0003	2028	52	22	13	8	4	4	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0004	2029	47	3	8	25	5	6	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0005	2027	30	2	5	18	1	4	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0006	2028	15	10	1	4	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0007	2028	9	1	5	0	0	3	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0008	2029	5	0	0	5	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0009	2027	4	4	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0010	2027	4	4	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0011	2028	3	0	0	3	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0012	2027	2	1	1	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0013	2028	2	0	0	2	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0014	2027	2	2	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0015	2028	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0016	2029	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0017	2027	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0018	2027	1	0	0	0	0	1	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0019	2028	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0020	2028	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0021	2028	1	0	0	0	0	1	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0022	2028	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0023	2029	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0024	2027	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0025	2029	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0026	2029	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0027	2027	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0028	2029	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0029	2029	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0030	2028	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	t0031	2029	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP5_chr19_54460026_54478296	0/1	t0001	450	367	77	67	169	14	39	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	t0002	450	42	11	10	14	0	7	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	t0003	450	6	6	0	0	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	t0004	450	2	0	1	0	0	1	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	t0005	450	2	2	0	0	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	t0006	450	1	0	0	0	0	1	copy fasta	CDC42EP5	chr19	54460026	54478296