JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42EP5_chr19_54460026_54478296	0/0	t0007	450	1	0	0	1	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42SE1_chr1_151045985_151064622	0/0	t0001	2770	127	13	21	73	5	15	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0002	2771	49	5	7	28	0	9	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0003	2768	47	18	13	12	2	2	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0004	2769	33	9	5	11	4	4	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0005	2767	21	11	7	0	1	2	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0006	2764	9	4	0	2	1	2	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0007	2766	5	5	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0008	2772	5	1	2	1	0	1	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0009	2770	4	4	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0010	2768	4	4	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0011	2768	3	3	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0012	2767	3	3	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0013	2769	3	3	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/1	t0014	2773	3	0	0	2	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0015	2773	3	3	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0016	2767	2	1	1	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0017	2764	2	0	0	0	0	2	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0018	2771	2	2	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0019	2767	2	0	0	1	1	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0020	2767	2	2	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0021	2764	2	0	2	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0022	2770	2	0	0	2	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0023	2770	1	0	0	1	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0024	2770	1	0	0	0	0	1	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0025	2771	1	0	0	1	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0026	2770	1	0	0	0	0	1	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0027	2767	1	1	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0028	2771	1	1	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0029	2772	1	1	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	1/0	t0030	2767	1	0	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	t0031	2770	1	0	0	0	0	1	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE2_chr5_131259053_131399672	0/1	t0001	4150	102	14	29	38	6	14	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	1/0	t0002	4150	38	2	5	21	4	5	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0003	4150	15	12	3	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0004	4151	14	1	6	4	0	3	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0005	4151	13	2	3	6	0	2	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0006	4150	13	13	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0007	4150	7	0	7	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0008	4150	6	6	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0009	4149	5	4	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0010	4156	3	0	1	0	0	2	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0011	4150	3	3	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0012	4150	2	2	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0013	4150	2	0	0	2	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0014	4153	2	2	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0015	4151	2	1	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0016	4152	2	2	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0017	4151	2	2	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0018	4155	1	0	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672