JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42SE2_chr5_131259053_131399672	0/0	t0019	4151	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0020	4150	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0021	4150	1	0	0	1	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0022	4150	1	0	0	1	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0023	4150	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0024	4150	1	0	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0025	4150	1	0	0	1	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0026	4150	1	0	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0027	4150	1	0	0	0	0	1	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0028	4150	1	0	0	0	0	1	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0029	4151	1	0	0	0	0	1	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0030	4149	1	0	0	1	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0031	4151	1	0	0	1	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0032	4156	1	0	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0033	4150	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0034	4150	1	0	0	0	0	1	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0035	4150	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0036	4150	1	0	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0037	4151	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0038	4149	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0039	4150	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0040	4151	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0041	4150	1	0	1	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	t0042	4151	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42_chr1_22047709_22106360	0/0	t0001	9919	19	0	4	12	2	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0002	9920	18	0	3	12	0	3	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0003	9919	10	0	2	8	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0004	9920	10	3	0	6	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0005	9918	9	0	2	7	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0006	9907	8	1	4	0	3	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0007	9922	7	0	4	1	0	2	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0008	9917	7	0	0	6	1	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	1/0	t0009	9928	6	0	1	0	1	3	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0010	9918	6	0	1	4	1	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/1	t0011	9921	6	3	1	0	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0012	9921	5	0	3	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0013	9920	5	0	2	3	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0014	9917	5	0	3	0	0	2	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0015	9919	5	0	1	2	0	2	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0016	9921	4	0	1	3	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0017	9916	4	3	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0018	9918	4	0	0	1	0	3	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0019	9922	4	0	0	4	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0020	9905	3	0	0	2	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0021	9918	3	0	1	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0022	9929	3	3	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0023	9905	3	2	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0024	9919	3	0	1	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0025	9920	3	0	1	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0026	9906	3	3	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360