Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS4_chr1_161179302_161204054	0/0	t0021	7298	3	0	1	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0022	7298	3	2	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0023	7296	3	0	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0024	7292	3	2	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0025	7290	3	0	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0026	7290	3	0	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0027	7288	3	0	0	3	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0028	7286	3	0	2	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0029	7282	3	0	1	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0030	7287	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0031	7285	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0032	7277	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0033	7276	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0034	7272	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0035	7265	2	1	0	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0036	7263	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0037	7292	2	0	1	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0038	7274	2	0	1	0	1	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0039	7302	2	0	1	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0040	7301	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0041	7300	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0042	7297	2	0	0	1	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0043	7295	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0044	7292	2	0	1	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0045	7291	2	0	1	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0046	7289	2	0	1	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0047	7288	2	0	1	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0048	7287	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0049	7266	2	0	1	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0050	7262	2	0	0	0	0	2	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0051	7294	2	0	0	0	2	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0052	7290	2	0	1	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0053	7288	2	0	0	0	1	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0054	7295	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0055	7294	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0056	7289	2	0	0	1	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0057	7288	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0058	7285	2	0	1	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0059	7284	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0060	7281	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0061	7276	2	0	0	2	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0062	7293	1	0	0	0	1	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0063	7264	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0064	7279	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0065	7276	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0066	7299	1	1	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0067	7294	1	0	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0068	7289	1	1	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0069	7278	1	1	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	t0070	7269	1	1	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054