JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42_chr1_22047709_22106360	0/0	t0027	9923	3	0	0	3	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0028	9925	3	0	0	3	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0029	9896	3	3	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0030	9924	3	0	1	1	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0031	9919	2	0	0	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0032	9921	2	0	0	0	0	2	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0033	9919	2	0	2	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0034	9916	2	2	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0035	9904	2	0	0	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0036	9894	2	1	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0037	9908	2	1	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0038	9915	2	0	0	0	1	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0039	9917	2	0	0	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0040	9918	2	2	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0041	9924	2	0	2	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0042	9923	2	0	1	0	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0043	9924	2	0	0	1	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0044	9925	2	2	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0045	9918	2	0	1	0	1	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0046	9918	2	1	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0047	9919	2	2	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0048	9920	2	2	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0049	9922	2	0	0	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0050	9923	2	0	0	1	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0051	9925	2	0	0	2	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0052	9921	2	1	0	0	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0053	9922	2	0	0	0	0	2	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0054	9923	2	2	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0055	9592	1	1	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0056	9592	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0057	9905	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0058	9906	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0059	9917	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0060	9921	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0061	9923	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0062	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0063	9919	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0064	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0065	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0066	9921	1	0	0	0	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0067	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0068	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0069	9921	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0070	9921	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0071	9921	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0072	9921	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0073	9922	1	0	0	0	0	1	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0074	9924	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0075	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0076	9920	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360