JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC42_chr1_22047709_22106360	0/0	t0177	9920	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0178	9920	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0179	9921	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0180	9923	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0181	9924	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0182	9925	1	0	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	t0183	9906	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC45_chr22_19474920_19525608	1/0	t0001	178	391	89	65	195	9	32	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	t0002	178	24	1	9	13	1	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/1	t0003	178	1	0	0	0	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC5L_chr6_44382706_44455425	1/1	t0001	3833	126	39	23	48	3	11	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0002	3829	88	5	9	65	1	8	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0003	3822	43	0	16	21	3	3	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0004	3823	15	0	0	15	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0005	3833	12	7	0	1	0	4	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0006	3830	9	1	0	8	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0007	3829	8	8	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0008	3831	6	0	1	5	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0009	3831	6	5	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0010	3834	3	3	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0011	3828	3	0	1	2	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0012	3833	3	3	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0013	3832	2	2	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0014	3834	2	0	1	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0015	3829	2	0	0	2	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0016	3831	2	1	1	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0017	3833	2	2	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0018	3833	2	0	0	2	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0019	3833	2	0	0	1	0	1	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0020	3833	1	0	1	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0021	3828	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0022	3827	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0023	3833	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0024	3833	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0025	3833	1	0	0	0	0	1	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0026	3831	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0027	3829	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0028	3829	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0029	3822	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0030	3824	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0031	3833	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0032	3833	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0033	3832	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0034	3832	1	0	1	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	t0035	3833	1	0	0	0	1	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC6_chr17_40282879_40309657	1/0	t0001	2882	191	38	39	77	7	29	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/1	t0002	2882	116	38	12	60	1	4	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0003	2882	4	0	0	4	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0004	2882	4	4	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0005	2882	3	0	0	0	0	3	copy fasta	CDC6	chr17	40282879	40309657