JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDC6_chr17_40282879_40309657	0/0	t0006	2882	2	0	0	2	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0007	2882	2	2	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0008	2882	1	1	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0009	2882	1	1	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0010	2882	1	0	1	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0011	2882	1	1	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0012	2882	1	1	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0013	2882	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0014	2882	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	t0015	2882	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC73_chr1_193117031_193259815	1/1	t0001	4274	237	60	46	102	9	18	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0002	4274	12	12	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0003	4273	7	1	0	6	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0004	4274	2	2	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0005	4274	1	0	0	0	1	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0006	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0007	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0008	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0009	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0010	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0011	4274	1	1	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0012	4274	1	0	0	0	0	1	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0013	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0014	4274	1	1	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0015	4274	1	1	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0016	4274	1	0	0	0	0	1	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0017	4274	1	1	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0018	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0019	4274	1	0	0	1	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	t0020	4274	1	1	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC7_chr1_91495851_91530764	0/1	t0001	1488	119	17	20	62	1	18	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0002	1491	107	20	17	56	3	11	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0003	1493	54	3	14	34	1	2	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0004	1491	42	0	11	15	9	7	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0005	1491	30	19	7	2	0	2	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0006	1489	11	9	2	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0007	1490	7	5	1	0	1	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0008	1488	6	6	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0009	1491	4	4	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	1/0	t0010	1491	4	3	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0011	1493	2	0	0	2	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0012	1491	2	1	0	0	1	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0013	1488	2	2	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0014	1489	1	1	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0015	1491	1	0	0	0	0	1	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0016	1487	1	0	0	1	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	t0017	1493	1	0	0	0	0	1	copy fasta	CDC7	chr1	91495851	91530764
CDCA2_chr8_25454233_25512911	0/1	t0001	415	150	24	23	70	12	20	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	t0002	415	128	43	25	45	4	11	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	t0003	415	26	1	3	19	0	3	copy fasta	CDCA2	chr8	25454233	25512911