JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDCA2_chr8_25454233_25512911	1/0	t0004	415	19	15	2	1	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	t0005	415	1	0	1	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	t0006	415	1	1	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	t0007	415	1	0	0	1	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA3_chr12_6843828_6856286	1/1	t0001	338	395	85	72	174	16	46	copy fasta	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	t0002	338	1	1	0	0	0	0	copy fasta	CDCA3	chr12	6843828	6856286
CDCA4_chr14_105004573_105026083	0/1	t0001	1722	124	13	32	50	7	21	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0002	1722	100	27	19	46	4	4	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	1/0	t0003	1723	66	3	8	46	1	7	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0004	1722	59	12	2	35	0	10	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0005	1723	15	14	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0006	1722	13	0	0	12	0	1	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0007	1722	8	7	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0008	1723	4	0	4	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0009	1721	3	0	0	3	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0010	1723	3	0	3	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0011	1722	3	0	0	3	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0012	1722	2	2	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0013	1722	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0014	1722	1	0	0	1	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0015	1722	1	0	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0016	1722	1	0	0	0	0	1	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0017	1723	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0018	1723	1	0	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0019	1723	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0020	1722	1	0	0	1	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0021	1723	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0022	1723	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0023	1722	1	0	0	1	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	t0024	1723	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA5_chr11_65072453_65089040	0/0	t0001	1716	162	54	15	77	5	11	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/1	t0002	1716	108	11	40	35	9	12	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	1/0	t0003	1717	54	22	5	14	1	11	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0004	1716	6	0	6	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0005	1716	6	1	5	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0006	1716	5	0	1	0	3	1	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0007	1717	4	1	3	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0008	1716	3	2	1	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0009	1716	2	2	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0010	1716	2	2	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0011	1717	1	0	0	0	0	1	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0012	1716	1	0	0	1	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0013	1716	1	0	0	1	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0014	1716	1	1	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0015	1716	1	0	0	1	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0016	1716	1	0	0	1	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0017	1716	1	1	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	t0018	1716	1	1	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA7L_chr7_21895899_21950899	1/0	t0001	1519	95	35	19	34	2	4	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0002	1500	94	8	8	70	1	7	copy fasta	CDCA7L	chr7	21895899	21950899