JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDCA7L_chr7_21895899_21950899	0/0	t0003	1500	62	4	14	28	8	8	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/1	t0004	1500	42	9	12	8	3	9	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0005	1500	19	0	4	10	1	4	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0006	1500	14	0	0	14	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0007	1500	12	4	7	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0008	1507	10	10	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0009	1504	6	0	1	0	1	4	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0010	1499	6	6	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0011	1507	6	3	1	0	1	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0012	1536	5	0	0	2	0	3	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0013	1508	5	0	0	5	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0014	1500	5	5	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0015	1512	4	0	0	2	0	2	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0016	1504	3	2	1	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0017	1503	3	0	0	3	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0018	1504	3	2	1	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0019	1605	3	0	0	3	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0020	1507	3	3	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0021	1506	2	2	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0022	1487	2	0	2	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0023	1524	2	2	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0024	1511	2	0	0	0	0	2	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0025	1484	2	0	0	2	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0026	1511	1	1	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0027	1519	1	1	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0028	1536	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0029	1519	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0030	1503	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0031	1499	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0032	1504	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0033	1511	1	0	1	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0034	1605	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0035	1500	1	0	0	0	1	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0036	1507	1	0	1	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0037	1507	1	0	1	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0038	1485	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0039	1479	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0040	1500	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0041	1522	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0042	1500	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0043	1532	1	1	0	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0044	1500	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0045	1487	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0046	1524	1	0	1	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	t0047	1519	1	0	0	1	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7_chr2_173349872_173373997	0/1	t0001	1426	158	11	31	91	7	17	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0002	1426	123	22	19	57	5	20	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0003	1426	48	0	4	43	0	1	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	1/0	t0004	1426	47	13	22	4	4	3	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0005	1427	26	1	5	16	0	4	copy fasta	CDCA7	chr2	173349872	173373997