JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDCA7_chr2_173349872_173373997	0/0	t0006	1416	21	21	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0007	1426	7	7	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0008	1426	7	7	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0009	1426	6	6	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0010	1426	5	0	0	5	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0011	1426	2	2	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0012	1426	2	2	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0013	1427	2	1	0	1	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0014	1426	1	1	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0015	1426	1	1	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0016	1403	1	0	0	0	0	1	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0017	1426	1	0	1	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0018	1427	1	0	0	1	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	t0019	1426	1	1	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA8_chr1_37687516_37714719	0/0	t0001	1529	162	35	18	94	2	13	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0002	1529	111	26	21	46	5	13	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	1/0	t0003	1529	52	2	15	23	3	8	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/1	t0004	1529	23	8	9	0	2	3	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0005	1529	15	0	4	9	0	2	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0006	1529	11	11	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0007	1529	11	8	3	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0008	1529	5	4	1	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0009	1529	5	0	0	0	4	1	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0010	1529	5	0	0	5	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0011	1529	3	3	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0012	1529	3	0	0	3	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0013	1529	2	0	0	0	0	2	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0014	1529	2	0	1	0	0	1	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0015	1529	1	1	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	t0016	1529	1	0	0	0	0	1	copy fasta	CDCA8	chr1	37687516	37714719
CDCP1_chr3_45077277_45151378	0/0	t0001	3453	126	2	22	88	3	11	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0002	3453	69	7	24	26	3	9	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0003	3453	27	5	7	10	1	4	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/1	t0004	3453	18	0	1	10	0	6	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0005	3453	13	0	0	13	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0006	3453	12	6	3	2	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0007	3453	11	11	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0008	3453	9	9	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0009	3453	9	7	1	0	1	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0010	3453	8	2	3	0	3	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	1/0	t0011	3453	8	6	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0012	3453	7	5	2	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0013	3453	6	1	2	1	0	2	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0014	3453	6	4	0	0	2	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0015	3453	5	4	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0016	3453	5	5	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0017	3453	4	0	0	0	0	4	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0018	3453	4	4	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0019	3453	4	4	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0020	3453	3	0	0	3	0	0	copy fasta	CDCP1	chr3	45077277	45151378