JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDCP1_chr3_45077277_45151378	0/0	t0021	3453	2	1	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0022	3453	2	1	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0023	3453	2	0	1	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0024	3453	2	0	2	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0025	3453	2	0	1	0	1	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0026	3453	2	2	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0027	3453	2	0	0	0	0	2	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0028	3453	2	0	1	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0029	3453	1	0	0	1	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0030	3453	1	0	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0031	3453	1	0	0	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0032	3453	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0033	3453	1	0	0	1	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0034	3453	1	0	0	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0035	3453	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0036	3453	1	0	0	1	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0037	3453	1	0	0	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0038	3453	1	0	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0039	3453	1	0	0	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0040	3453	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0041	3453	1	0	0	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	t0042	3453	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP2_chr1_54127687_54158000	1/1	t0001	360	428	94	82	184	18	48	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	t0002	360	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	t0003	360	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	t0004	360	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDH10_chr5_24482100_24649978	0/1	t0001	1073	174	33	23	90	7	20	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	1/0	t0002	1072	71	50	6	14	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0003	1072	17	5	8	0	1	3	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0004	1074	16	0	2	9	0	5	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0005	1073	2	0	0	2	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0006	1073	2	0	0	0	1	1	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0007	1073	2	0	0	1	1	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0008	1072	2	1	1	0	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0009	1073	1	0	0	0	0	1	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0010	1073	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0011	1073	1	1	0	0	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	t0012	1073	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH11_chr16_64938753_65127063	0/0	t0001	4330	61	1	17	34	3	6	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0002	4331	47	1	10	31	1	4	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0003	4329	44	3	15	17	2	7	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0004	4330	22	7	3	11	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0005	4332	17	4	12	0	1	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0006	4330	17	17	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0007	4330	12	6	1	2	0	3	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0008	4330	10	10	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0009	4330	9	1	0	8	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0010	4331	5	1	1	0	1	2	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0011	4330	5	5	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0012	4330	4	3	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063