JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH11_chr16_64938753_65127063	0/0	t0013	4333	4	0	2	2	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/1	t0014	4332	4	3	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0015	4330	4	0	0	4	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0016	4330	3	3	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0017	4330	3	3	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0018	4330	3	0	0	0	2	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0019	4332	2	0	0	0	0	2	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0020	4332	2	0	2	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0021	4329	2	1	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0022	4332	2	2	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0023	4331	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0024	4330	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0025	4329	1	0	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0026	4333	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0027	4330	1	0	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0028	4330	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0029	4330	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0030	4330	1	0	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0031	4332	1	0	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0032	4332	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0033	4330	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0034	4330	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0035	4330	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0036	4330	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0037	4332	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0038	4330	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0039	4329	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0040	4329	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0041	4330	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	1/0	t0042	4332	1	0	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0043	4332	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0044	4329	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0045	4328	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0046	4332	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0047	4330	1	0	1	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	t0048	4330	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH12_chr5_21745673_22858344	0/0	t0001	1881	15	14	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0002	1870	9	8	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0003	1891	5	2	3	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0004	1895	5	4	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0005	1881	2	2	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0006	1891	2	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0007	1911	1	0	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0008	1881	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0009	1870	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0010	1870	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0011	1887	1	0	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0012	1895	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0013	1895	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0014	1879	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344