JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CDH12_chr5_21745673_22858344	0/0	t0015	1895	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0016	1885	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0017	1893	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0018	1874	1	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0019	1874	1	0	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0020	1881	1	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0021	1889	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0022	1893	1	0	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0023	1892	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0024	1897	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0025	1878	1	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0026	1891	1	0	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0027	1881	1	0	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	t0028	1891	1	0	0	1	0	copy fasta	CDH12	chr5	21745673	22858344
CDH13_chr16_82621969_83805640	0/0	t0001	5735	18	7	4	3	4	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0002	5730	12	4	4	1	3	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0003	5727	9	1	6	1	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0004	5734	9	6	3	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0005	5728	5	3	2	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0006	5728	5	5	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0007	5728	3	0	3	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0008	5732	3	3	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0009	5733	2	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0010	5735	2	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0011	5734	2	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0012	5735	2	0	2	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0013	5734	2	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0014	5727	2	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0015	5731	2	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0016	5727	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0017	5729	1	0	1	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0018	5728	1	0	0	0	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0019	5727	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0020	5730	1	0	0	0	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0021	5728	1	0	1	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0022	5728	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0023	5736	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0024	5705	1	0	0	0	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0025	5735	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0026	5735	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0027	5736	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0028	5736	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0029	5727	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0030	5727	1	0	0	1	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0031	5735	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0032	5730	1	0	1	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0033	5729	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0034	5728	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0035	5736	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0036	5727	1	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640