JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH13_chr16_82621969_83805640	0/0	t0037	5733	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0038	5733	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0039	5733	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0040	5728	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0041	5728	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0042	5733	1	0	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0043	5736	1	0	0	0	0	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0044	5730	1	0	0	0	1	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0045	5734	1	0	0	0	1	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0046	5734	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	t0047	5734	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH15_chr16_89166748_89200492	1/1	t0001	422	283	74	39	137	8	23	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0002	422	65	14	25	10	8	8	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0003	422	29	1	2	20	0	6	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0004	422	24	0	3	14	0	7	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0005	422	2	2	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0006	422	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0007	422	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	t0008	422	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH16_chr16_66903122_66923885	1/1	t0001	366	339	76	58	158	11	34	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	t0002	366	27	13	4	8	1	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	t0003	363	17	8	2	0	0	7	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	t0004	363	3	3	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH17_chr8_94122162_94213555	0/1	t0001	1172	225	54	53	80	10	27	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	1/0	t0002	1172	65	7	13	34	1	9	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0003	1172	14	13	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0004	1172	13	2	4	7	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0005	1172	6	5	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0006	1172	4	2	0	2	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0007	1172	3	3	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0008	1172	2	2	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0009	1172	2	0	1	0	1	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0010	1172	1	0	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0011	1172	1	0	0	1	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0012	1172	1	0	0	0	0	1	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	t0013	1172	1	0	0	0	0	1	copy fasta	CDH17	chr8	94122162	94213555
CDH18_chr5_19466296_19993200	1/0	t0001	2421	55	19	18	6	5	6	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0002	2419	14	1	4	5	2	2	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0003	2420	12	9	1	0	0	2	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/1	t0004	2421	7	2	0	2	1	1	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0005	2420	6	4	2	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0006	2421	4	4	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0007	2420	4	3	0	0	1	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0008	2420	3	3	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0009	2420	3	3	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0010	2421	2	2	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0011	2421	2	2	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0012	2420	2	2	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0013	2420	2	1	0	1	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0014	2420	2	2	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200