JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH18_chr5_19466296_19993200	0/0	t0015	2421	2	2	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0016	2420	2	2	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0017	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0018	2421	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0019	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0020	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0021	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0022	2421	1	0	0	0	0	1	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0023	2420	1	0	1	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0024	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0025	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0026	2419	1	0	0	0	1	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0027	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0028	2421	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0029	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0030	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0031	2420	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	t0032	2421	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH19_chr18_66496083_66609090	0/1	t0001	3979	69	3	12	35	7	11	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0002	3981	59	9	9	36	1	4	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0003	3981	55	6	11	32	3	3	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0004	3980	48	9	7	25	1	6	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0005	3983	14	0	9	1	1	3	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0006	3982	10	9	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0007	3980	10	2	0	8	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0008	3978	9	0	1	6	0	2	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0009	3979	8	8	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0010	3981	7	7	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0011	3974	7	7	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0012	3982	5	0	4	0	0	1	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0013	3979	5	3	0	2	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0014	3979	4	1	2	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0015	3982	3	2	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0016	3981	3	0	0	3	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0017	3980	3	3	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0018	3980	3	0	0	3	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0019	3980	3	3	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0020	3977	2	2	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0021	3981	2	1	0	0	1	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0022	3979	2	2	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	1/0	t0023	3979	2	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0024	3979	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0025	3977	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0026	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0027	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0028	3983	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0029	3983	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0030	3981	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0031	3981	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0032	3981	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090