JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH19_chr18_66496083_66609090	0/0	t0033	3981	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0034	3981	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0035	3981	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0036	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0037	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0038	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0039	3980	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0040	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0041	3980	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0042	3980	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0043	3980	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	t0044	3979	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH1_chr16_68732292_68840537	1/1	t0001	2163	205	46	46	73	9	29	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0002	2163	42	18	3	18	1	2	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0003	2164	28	1	8	16	2	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0004	2164	7	6	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0005	2164	6	6	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0006	2165	5	5	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0007	2164	4	1	2	0	1	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0008	2164	3	0	0	0	0	3	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0009	2163	3	0	2	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0010	2163	2	2	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0011	2163	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0012	2163	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0013	2163	1	0	1	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0014	2163	1	0	0	1	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0015	2163	1	0	1	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0016	2163	1	0	0	0	1	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0017	2163	1	0	1	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0018	2163	1	0	0	1	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0019	2163	1	0	0	1	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0020	2164	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	t0021	2164	1	0	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH20_chr18_61328430_61560779	0/1	t0001	1635	87	33	19	22	3	9	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0002	1635	43	26	5	8	3	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0003	1635	36	7	11	8	2	8	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0004	1635	34	1	6	25	0	2	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0005	1635	11	0	3	6	0	2	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0006	1635	11	0	2	7	1	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0007	1635	10	1	0	5	0	4	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0008	1634	8	8	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0009	1634	7	7	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0010	1635	6	0	0	5	0	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0011	1635	4	0	0	4	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0012	1635	3	0	0	0	1	2	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0013	1635	2	0	0	1	0	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0014	1635	2	2	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	1/0	t0015	1635	2	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0016	1635	2	2	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0017	1635	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779