JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CDH20_chr18_61328430_61560779	0/0	t0018	1634	1	0	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0019	1635	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0020	1635	1	0	0	0	0	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0021	1634	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0022	1635	1	0	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0023	1635	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0024	1635	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0025	1635	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0026	1634	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0027	1635	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	t0028	1635	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH22_chr20_46168739_46313498	1/0	t0001	1411	147	29	22	69	7	19	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/1	t0002	1411	90	34	20	27	2	6	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0003	1411	57	14	14	16	5	8	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0004	1411	12	5	1	4	0	2	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0005	1403	4	3	0	1	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0006	1411	3	3	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0007	1403	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0008	1411	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0009	1411	1	0	1	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0010	1411	1	0	0	1	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	t0011	1411	1	0	0	0	0	1	copy fasta	CDH22	chr20	46168739	46313498
CDH23_chr10_71391920_71820947	0/1	t0001	1074	58	26	13	9	2	7	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0002	1079	19	2	3	7	2	5	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	1/0	t0003	1074	17	2	6	6	1	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0004	1079	15	0	5	8	0	2	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0005	1074	11	1	5	4	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0006	1079	9	1	2	6	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0007	1074	9	5	1	3	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0008	1069	9	8	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0009	1069	7	2	2	0	2	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0010	1069	4	0	0	4	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0011	1069	4	2	0	0	0	2	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0012	1069	3	1	2	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0013	1069	3	3	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0014	1079	2	0	0	2	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0015	1079	2	0	0	2	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0016	1074	2	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0017	1074	2	0	1	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0018	1069	2	2	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0019	1076	2	2	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0020	1069	1	0	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0021	1069	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0022	1069	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0023	1074	1	0	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0024	1079	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0025	1079	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0026	1074	1	0	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0027	1074	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	t0028	1074	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947